P. trichocarpa v3.0 (210): 40 kbp from Chr01:80,000..120,000

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Landmark or Region: Examples: Chr01, Chr03, Chr01:1101643..1102101, Chr01:1660..2502, Chr01:38365..39364, Chr13:100760..100902, Chr12:143000..180000, Chr11:1934..2776, Chr01:80,000..120,000, Chr14:7304281..7305280, ptc-miR156a, ptc-miR159d, XLOC_000093.1, Potri.012G001200, Potri.002G002200.
Data Source	Scroll/Zoom: Flip

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GC Content

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CDS

tRNAs

Transposons

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The Generic Genome Browser. For questions about the data at this site, please contact its webmaster. For support of the browser software only, send email to gmod-gbrowse@lists.sourceforge.net or visit the GMOD Project web pages.

3-frame translation (forward)	iso-seq	Named gene
3-frame translation (reverse)	lncRNA	Noncoding RNAs
6-frame translation	lncRNA-edited	Transposons
CDS [?]	lncRNA-edited-old	tRNAs
DNA/GC Content	Long Terminal Repeats
Frame usage	miRBase miRNA

MG Assembly transcripts LeafCtrl	New MG Assembly transcripts LeafLH	New MG Assembly transcripts RootSD
MG Assembly transcripts LeafLD	New MG Assembly transcripts LeafLS	New MG Assembly transcripts RootSH
MG Assembly transcripts LeafSD	New MG Assembly transcripts LeafSC	New MG Assembly transcripts RootSS
MG Assembly transcripts RootCtrl	New MG Assembly transcripts LeafSD	New MG Assembly transcripts XylemCtrl
MG Assembly transcripts RootLD	New MG Assembly transcripts LeafSH	New MG Assembly transcripts XylemLC
MG Assembly transcripts RootSD	New MG Assembly transcripts LeafSS	New MG Assembly transcripts XylemLD
MG Assembly transcripts XylemCtrl	New MG Assembly transcripts RootCtrl	New MG Assembly transcripts XylemLH
MG Assembly transcripts XylemLD	New MG Assembly transcripts RootLC	New MG Assembly transcripts XylemLS
MG Assembly transcripts XylemSD	New MG Assembly transcripts RootLD	New MG Assembly transcripts XylemSC
New MG Assembly transcripts LeafCtrl	New MG Assembly transcripts RootLH	New MG Assembly transcripts XylemSD
New MG Assembly transcripts LeafLC	New MG Assembly transcripts RootLS	New MG Assembly transcripts XylemSH
New MG Assembly transcripts LeafLD	New MG Assembly transcripts RootSC	New MG Assembly transcripts XylemSS

LC_1-2k_cns_q-STAR	RC_1-2k_cns_q-STAR	XC_2-3k_cns_q-STAR
LC_1-2k_cns_q_clean	RC_1-2k_cns_q_clean	XC_2-3k_cns_q_clean
LC_2-3k_cns_q-STAR	RC_2-3k_cns_q-STAR	XC_3-6k_cns-STAR
LC_2-3k_cns_q_clean	RC_2-3k_cns_q_clean	XC_3-6k_cns_clean
LC_3-6k_cns-STAR	RC_3-6k_cns_q-STAR	XC_5-10k_cns_q-STAR
LC_3-6k_cns_clean	RC_3-6k_cns_q_clean	XC_5-10k_cns_q_clean
LC_5-10k_cns_q-STAR	RC_5-10k_at2-3k_cns_q-STAR	XS_1-2k_cns_3-STAR
LC_5-10k_cns_q_clean	RC_5-10k_at2-3k_cns_q_clean	XS_1-2k_cns_3_clean
LS_1-2kb_cns_new-STAR	RS_2-3k_cns_q-STAR	XS_2-3k_cns_q-STAR
LS_1-2kb_cns_new_clean	RS_2-3k_cns_q_clean	XS_2-3k_cns_q_clean
LS_2-3k_cns_q-STAR	RS_3-6k_cns-STAR	XS_3-6k_cns-STAR
LS_2-3k_cns_q_clean	RS_3-6k_cns_clean	XS_3-6k_cns_clean
LS_3-6k_cns-STAR	RS_5-10k_cns_q-STAR	XS_5-10k_cns_q-STAR
LS_3-6k_cns_clean	RS_5-10k_cns_q_clean	XS_5-10k_cns_q_clean
LS_5-10k_cns-STAR	XC_1-2k_cns_q-STAR
LS_5-10k_cns_clean	XC_1-2k_cns_q_clean

C24HL	Leaf_prolonged_salt	Root_Short-term_salt
C24HR	Leaf_short-term_drought	Xylem_Control_set1
C24HX	Leaf_short-term_heat	Xylem_Control_set2
CEXL	Leaf_Short-term_salt	Xylem_prolonged_drought
CEXR	Root_Control_set2	Xylem_prolonged_heat
CEXX	Root_prolonged_drought	Xylem_prolonged_salt
Leaf_Control_set1	Root_prolonged_heat	Xylem_short-term_drought
Leaf_Control_set2	Root_prolonged_salt	Xylem_short-term_heat
Leaf_prolonged_drought	Root_short-term_drought	Xylem_Short-term_salt
Leaf_prolonged_heat	Root_short-term_heat

All Cold Data	Cufflinks transcripts Leaf_prolonged_salt	Cufflinks transcripts Xylem_Control_set1
C24HL_Cufflinks Models	Cufflinks transcripts Leaf_short-term_drought	Cufflinks transcripts Xylem_Control_set2
C24HR_Cufflinks Models	Cufflinks transcripts Leaf_short-term_heat	Cufflinks transcripts Xylem_prolonged_drought
C24HX_Cufflinks Models	Cufflinks transcripts Leaf_Short-term_salt	Cufflinks transcripts Xylem_prolonged_heat
CEXL_Cufflinks Models	Cufflinks transcripts Root_Control_set2	Cufflinks transcripts Xylem_prolonged_salt
CEXR_Cufflinks Models	Cufflinks transcripts Root_prolonged_drought	Cufflinks transcripts Xylem_short-term_drought
CEXX_Cufflinks Models	Cufflinks transcripts Root_prolonged_heat	Cufflinks transcripts Xylem_short-term_heat
Cufflinks transcripts Leaf_Control_set1	Cufflinks transcripts Root_prolonged_salt	Cufflinks transcripts Xylem_Short-term_salt
Cufflinks transcripts Leaf_Control_set2	Cufflinks transcripts Root_short-term_drought	Leaf_iDIFFIR Models
Cufflinks transcripts Leaf_prolonged_drought	Cufflinks transcripts Root_short-term_heat	Root_iDIFFIR Models
Cufflinks transcripts Leaf_prolonged_heat	Cufflinks transcripts Root_Short-term_salt	Xylem_iDIFFIR Models

P. trichocarpa v3.0 (210): 40 kbp from Chr01:80,000..120,000

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